Multi-scale models of the rat and mouse brain integrate models of ion channels, single cells, microcircuits, brain regions, and brain systems at different levels of granularity (molecular models, morphologically detailed cellular models, and abstracted point neuron models).
Blue Brain’s reconstruction and related simulations are made possible by a comprehensive software ecosystem for each step in the reconstruction and simulation process. Blue Brain systematically releases open source software.
The online tools available to assist users with simulation neuroscience are a collection of platforms and atlases from the Blue Brain and our collaborators.
Data is of vital importance to the study of the Brain. For neuroscientists in this section, there are ion channel recordings, morphological reconstructions, electrical recordings from neocorticol neurons and molecular properties of neurons. These are available on Blue Brain platforms and the Human Brain Project Brain Simulation platform.
The first Swiss Early-Career Researchers Symposium ‘Neural population coding and emergent properties of cell assemblies’, took place at the Campus Biotech, Geneva on Thursday 31 January, preceding the annual Swiss Society for Neuroscience meeting. The event was organized by the young Swiss Society for Neuroscience - a team of PhD students and postdocs aiming to improve synergy and scientific exchange between young scientists in Switzerland.
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The first digital 3D atlas of every cell in the mouse brain provides neuroscientists with previously unavailable information on major cell types, numbers and positions in all 737 brain regions – which will potentially accelerate progress in brain science massively. Released by EPFL’s Blue Brain Project and published in Frontiers in Neuroinformatics, the Blue Brain Cell Atlas integrates data from thousands of whole brain tissue stains into a comprehensive, interactive and dynamic online resource that can continuously be updated with new findings. This groundbreaking digital atlas can be used for analyzing and further modeling specific brain areas, and is a major step toward a full simulation of the rodent brain.