The Multi-scale Brain


About this course


Understanding the brain requires an integrated understanding of different scales of organisation of the brain. This means studying the role that genes, channels, cells, microcircuits, and even whole brain regions have in different types of behaviour: From perception to action, while asleep or when awake.


This course will take you through the latest data, models and techniques for investigating the different levels of the brain. We will show how we can put the pieces together, attain new insights, and derive new theories. With contributions from more than 10 international neuroscientists from six different research institutions, the MOOC gives a broad overview of the latest tools and techniques for neuroinformatics, analysis, modelling and simulation.


At the same time, several different tutorials on available data and data tools, such as those from the Allen Institute for Brain Science, provide you with in-depth knowledge on brain atlases, gene expression data and modeling neurons. These tutorials will be followed by exercises that give you the opportunity to acquire the necessary skills to use the tools and data for your own research.


What you will learn


How to explain and contrast different techniques for visualization, mapping, and modeling of single cells, synaptic fields, larger circuits of neurons, and long-range interactions between cortical areas


Ways to classify neurons and relate cell morphology to function


How to use brain atlases and modeling tools


View full course syllabus


Meet the instructors


Sean Hill, Professor École polytechnique fédérale de Lausanne, Blue Brain Project, Director of the Krembil Centre of Neuroinformatics at the Centre of Addiction and Mental Health in Toronto, Canada


Dr. Terri Gilbert, Gilhou Scientific Communications


Dr. Forrest Collman, Allen Institute for Brain Science


Dr. Trygve Bakken, Allen Institute for Brain Science


Dr. Saskia de Vries, Allen Institute for Brain Science


Dr. Jack Waters, Allen Institute for Brain Science


Prof. Huib Mansvelder, Professor Center for Neurogenomics and Cognitive Research


Dr. Vilas Menon, Janelia research campus



Dr. Alain Destexhe,
Le Centre national de la recherche scientifique


Prof. Francesco Pavone, Professor École polytechnique fédérale de Lausanne


Dr. Danilo Bzdok, RWTH Aachen University


Dr. Michael Reimann, Group Leader for Connectomics within the Simulation Neuroscience Division, Blue Brain Project


Click here to register